Publications
To view a complete list of Dr. Medvedev’s publications, please visit Google Scholar
Selected publications
2025
Leveraging AI to explore structural contexts of post-translational modifications in drug binding
Journal of Cheminformatics
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04 May 2025
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10.1186/s13321-025-01019-y
2024
ECOD: integrating classifications of protein domains from experimental and predicted structures
Nucleic Acids Research
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20 Nov 2024
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doi:10.1093/nar/gkae1029
Protein Science
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09 Jul 2024
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doi:10.1002/pro.5116
Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands
Scientific Reports
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28 May 2024
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doi:10.1038/s41598-024-60991-x
ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2
PLOS Computational Biology
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28 Feb 2024
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doi:10.1371/journal.pcbi.1011586
Deep Learning for Subtypes Identification of Pure Seminoma of the Testis
Clinical Pathology
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01 Jan 2024
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doi:10.1177/2632010X241232302
2023
Pan-cancer structurome reveals overrepresentation of beta sandwiches and underrepresentation of alpha helical domains
Scientific Reports
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25 Jul 2023
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doi:10.1038/s41598-023-39273-5
Seminoma subtypes differ in the organization and functional state of the immune microenvironment
3 Biotech
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01 Mar 2023
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doi:10.1007/s13205-023-03530-1
2022
Integrated Molecular Analysis Reveals 2 Distinct Subtypes of Pure Seminoma of the Testis
Cancer Informatics
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01 Jan 2022
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doi:10.1177/11769351221132634
2021
A Fifth of the Protein World: Rossmann-like Proteins as an Evolutionarily Successful Structural unit
Journal of Molecular Biology
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01 Feb 2021
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doi:10.1016/j.jmb.2020.166788
2019
Functional analysis of Rossmann-like domains reveals convergent evolution of topology and reaction pathways
PLOS Computational Biology
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23 Dec 2019
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doi:10.1371/journal.pcbi.1007569